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Creators/Authors contains: "Fotouhi, Fateme"

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  1. IntroductionEffective monitoring of insect-pests is vital for safeguarding agricultural yields and ensuring food security. Recent advances in computer vision and machine learning have opened up significant possibilities of automated persistent monitoring of insect-pests through reliable detection and counting of insects in setups such as yellow sticky traps. However, this task is fraught with complexities, encompassing challenges such as, laborious dataset annotation, recognizing small insect-pests in low-resolution or distant images, and the intricate variations across insect-pests life stages and species classes. MethodsTo tackle these obstacles, this work investigates combining two solutions, Hierarchical Transfer Learning (HTL) and Slicing-Aided Hyper Inference (SAHI), along with applying a detection model. HTL pioneers a multi-step knowledge transfer paradigm, harnessing intermediary in-domain datasets to facilitate model adaptation. Moreover, slicing-aided hyper inference subdivides images into overlapping patches, conducting independent object detection on each patch before merging outcomes for precise, comprehensive results. ResultsThe outcomes underscore the substantial improvement achievable in detection results by integrating a diverse and expansive in-domain dataset within the HTL method, complemented by the utilization of SAHI. DiscussionWe also present a hardware and software infrastructure for deploying such models for real-life applications. Our results can assist researchers and practitioners looking for solutions for insect-pest detection and quantification on yellow sticky traps. 
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    Free, publicly-accessible full text available November 22, 2025
  2. To meet the grand challenges of agricultural production including climate change impacts on crop production, a tight integration of social science, technology and agriculture experts including farmers are needed. Rapid advances in information and communication technology, precision agriculture and data analytics, are creating a perfect opportunity for the creation of smart connected farms (SCFs) and networked farmers. A network and coordinated farmer network provides unique advantages to farmers to enhance farm production and profitability, while tackling adverse climate events. The aim of this article is to provide a comprehensive overview of the state of the art in SCF including the advances in engineering, computer sciences, data sciences, social sciences and economics including data privacy, sharing and technology adoption. More specifically, we provide a comprehensive review of key components of SCFs and crucial elements necessary for its success. It includes, high-speed connections, sensors for data collection, and edge, fog and cloud computing along with innovative wireless technologies to enable cyber agricultural system. We also cover the topic of adoption of these technologies that involves important considerations around data analysis, privacy, and the sharing of data on platforms. From a social science and economics perspective, we examine the net-benefits and potential barriers to data-sharing within agricultural communities, and the behavioral factors influencing the adoption of SCF technologies. The focus of this review is to cover the state-of-the-art in smart connected farms with sufficient technological infrastructure; however, the information included herein can be utilized in geographies and farming systems that are witnessing digital technologies and want to develop SCF. Overall, taking a holistic view that spans technical, social and economic dimensions is key to understanding the impacts and future trajectory of Smart and Connected Farms. 
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  3. In this paper we propose a new framework—MoViLan (Modular Vision and Language) for execution of visually grounded natural language instructions for day to day indoor household tasks. While several data-driven, end-to-end learning frameworks have been proposed for targeted navigation tasks based on the vision and language modalities, performance on recent benchmark data sets revealed the gap in developing comprehensive techniques for long horizon, compositional tasks (involving manipulation and navigation) with diverse object categories, realistic instructions and visual scenarios with non reversible state changes. We propose a modular approach to deal with the combined navigation and object interaction problem without the need for strictly aligned vision and language training data (e.g., in the form of expert demonstrated trajectories). Such an approach is a significant departure from the traditional end-to-end techniques in this space and allows for a more tractable training process with separate vision and language data sets. Specifically, we propose a novel geometry-aware mapping technique for cluttered indoor environments, and a language understanding model generalized for household instruction following. We demonstrate a significant increase in success rates for long horizon, compositional tasks over recent works on the recently released benchmark data set -ALFRED. 
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  4. Using a reliable and accurate method to phenotype disease incidence and severity is essential to unravel the complex genetic architecture of disease resistance in plants, and to develop disease resistant cultivars. Genome-wide association studies (GWAS) involve phenotyping large numbers of accessions, and have been used for a myriad of traits. In field studies, genetic accessions are phenotyped across multiple environments and replications, which takes a significant amount of labor and resources. Deep Learning (DL) techniques can be effective for analyzing image-based tasks; thus DL methods are becoming more routine for phenotyping traits to save time and effort. This research aims to conduct GWAS on sudden death syndrome (SDS) of soybean [ Glycine max L. (Merr.)] using disease severity from both visual field ratings and DL-based (using images) severity ratings collected from 473 accessions. Images were processed through a DL framework that identified soybean leaflets with SDS symptoms, and then quantified the disease severity on those leaflets into a few classes with mean Average Precision of 0.34 on unseen test data. Both visual field ratings and image-based ratings identified significant single nucleotide polymorphism (SNP) markers associated with disease resistance. These significant SNP markers are either in the proximity of previously reported candidate genes for SDS or near potentially novel candidate genes. Four previously reported SDS QTL were identified that contained a significant SNPs, from this study, from both a visual field rating and an image-based rating. The results of this study provide an exciting avenue of using DL to capture complex phenotypic traits from images to get comparable or more insightful results compared to subjective visual field phenotyping of traits for disease symptoms. 
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